read_homer {universalmotif} | R Documentation |
Import HOMER formatted motifs. See http://homer.ucsd.edu/homer/motif/. Assumed to be DNA motifs.
read_homer(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Heinz S, Benner C, Spann N, Bertolino E, Lin Y, Laslo P, Cheng J, Murre C, Singh H, Glass C (2010). “Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.” Molecular Cell, 38, 576-589.
Other read_motifs: read_cisbp
,
read_jaspar
, read_matrix
,
read_meme
, read_motifs
,
read_transfac
, read_uniprobe
homer <- read_homer(system.file("extdata", "homer.txt", package = "universalmotif"))