write_jaspar {universalmotif} | R Documentation |
Convert motifs to JASPAR format and write to file. See http://jaspar.genereg.net/.
write_jaspar(motifs, file, overwrite = FALSE, append = FALSE)
motifs |
See |
file |
|
overwrite |
|
append |
|
NULL
, invisibly.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon J, van der Lee R, Bessy A, Cheneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas D, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman W, Parcy F, Mathelier A (2018). “JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.” Nucleic Acids Research, 46, D260-D266.
Other write_motifs: write_homer
,
write_matrix
, write_meme
,
write_motifs
, write_transfac
transfac <- read_transfac(system.file("extdata", "transfac.txt", package = "universalmotif")) write_jaspar(transfac, tempfile())