JASPAR2018_CORE_DBSCORES {universalmotif}R Documentation

JASPAR2018 CORE database scores.

Description

For use with compare_motifs(). The precomputed scores allow for fast P-value estimation. These scores were generated using make_DBscores() with the JASPAR2018 CORE motif set, with normalise.scores = FALSE. This particular set of scores is organized as a list, with each list item being a data.frame of scores for a specific comparison method. In each data.frame is the mean and sd of scores resulting between the comparisons of JASPAR2018 CORE motifs with randomized motifs of the specified subject and target motif length.

Usage

JASPAR2018_CORE_DBSCORES

Format

list with three data.frames


[Package universalmotif version 1.2.1 Index]