fluidigmSC_removeGenesByLinearExpForAllType_log2 {uSORT} | R Documentation |
A gene trimming function removes genes whose average expression value is below the log2(threshold); reproduced from FluidigmSC package.
fluidigmSC_removeGenesByLinearExpForAllType_log2(log2ex_data, threshold)
log2ex_data |
A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells. |
threshold |
A limit of detection in the unit of TPM/CPM/RPMK. |
A vector of character containing gene names of those passed the filtering.