checkKmers {transite} | R Documentation |
Checks if the provided set of k-mers is valid. A valid set of k-mers is (1) non-empty, (2) contains either only hexamers or only heptamers, and (3) contains only characters from the RNA alphabet (A, C, G, U)
checkKmers(kmers)
kmers |
set of k-mers |
TRUE
if set of k-mers is valid
Other k-mer functions: calculateKmerEnrichment
,
computeKmerEnrichment
,
drawVolcanoPlot
,
empiricalEnrichmentMeanCDF
,
generateKmers
,
generatePermutedEnrichments
,
homopolymerCorrection
,
permTestGeometricMean
,
runKmerSPMA
, runKmerTSMA
# valid set checkKmers(c("ACGCUC", "AAACCC", "UUUACA")) # invalid set (contains hexamers and heptamers) checkKmers(c("ACGCUC", "AAACCC", "UUUACAA"))