SYSargs2list {systemPipeR} | R Documentation |
Methods to access information from SYSargs2
object.
SYSargs2list(x)
x |
object of class |
various outputs
Daniela Cassol and Thomas Girke
## Construct SYSargs2 object from CWl param, CWL input, and targets files targets <- system.file("extdata", "targets.txt", package="systemPipeR") dir_path <- system.file("extdata/cwl", package="systemPipeR") WF <- loadWorkflow(targets=targets, wf_file="hisat2-se/hisat2-mapping-se.cwl", input_file="hisat2-se/hisat2-mapping-se.yml", dir_path=dir_path) WF <- renderWF(WF, inputvars=c(FileName="_FASTQ_PATH_", SampleName="_SampleName_")) WF names(WF); modules(WF); targets(WF)[1]; cmdlist(WF)[1:2]; output(WF)