targets.as.df {systemPipeR} | R Documentation |
Convert list
, which stores data from each target input
file to data.frame
object.
targets.as.df(x)
x |
An object of the class |
data.frame
containing all the input
file information.
Daniela Cassol and Thomas Girke
targets <- system.file("extdata", "targets.txt", package="systemPipeR") dir_path <- system.file("extdata/cwl", package="systemPipeR") WF <- loadWorkflow(targets=targets, wf_file="hisat2-se/hisat2-mapping-se.cwl", input_file="hisat2-se/hisat2-mapping-se.yml", dir_path=dir_path) WF <- renderWF(WF, inputvars=c(FileName="_FASTQ_PATH_", SampleName="_SampleName_")) WF targets.as.df(targets(WF))