moduleload {systemPipeR}R Documentation

Interface to module system

Description

Functions to list and load software from a module system in R. The functions are the equivalent of module avail and module load on the Linux command-line, respectively.

Usage

moduleload(module, envir="PATH")

modulelist()

Arguments

module

Name of software to load character vector.

envir

One or many environment variables passed on as character vector.

Author(s)

Tyler Backman and Thomas Girke

Examples

## Not run: 
## List all software from module system
modulelist()

## Examples for loading software from module system
moduleload(module="bowtie2/2.0.6", envir="PATH")
moduleload(module="python", envir=c("PATH", "LD_LIBRARY_PATH", "PYTHONPATH"))

## End(Not run)

[Package systemPipeR version 1.18.2 Index]