getBiomarker {singleCellTK}R Documentation

Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

Description

Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

Usage

getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")

Arguments

inSCE

Input SCtkExperiment object. Required

gene

gene list

binary

"Binary" for binary expression or "Continuous" for a gradient. Default: "Binary"

useAssay

Indicate which assay to use. The default is "counts".

Value

getBiomarker(): A data.frame of expression values

Examples

getBiomarker(mouseBrainSubsetSCE, gene="C1qa")


[Package singleCellTK version 1.4.2 Index]