profilesPlot {sigaR} | R Documentation |
Plots a sample's copy number and gene expression data side-by-side. This visualizes the relation between CN and GE within an individual sample.
profilesPlot(CNdata, GEdata, sampleNo, chr = 0, verbose=TRUE)
CNdata |
Object of class |
GEdata |
Object of class |
sampleNo |
Sample number of sample to be plotted. Corresponds to the order in which samples appear the |
chr |
Chromosome number for which the profiles are to be plotted. Default |
verbose |
Logical indicator: should intermediate output be printed on the screen? |
The blue lines in the gene expression profile plot are the median expressions of genes that map to the same copy number segment.
Wessel N. van Wieringen: w.vanwieringen@vumc.nl
# load data data(pollackCN16) data(pollackGE16) # plot CN and GE profiles alongside profilesPlot(pollackCN16, pollackGE16, 23, 16)