readIDATpair {sesame}R Documentation

Import a pair of IDATs from one sample

Description

The function takes a prefix string that are shared with _Grn.idat and _Red.idat. The function returns a SigSet.

Usage

readIDATpair(prefix.path, platform = "", manifest = NULL,
  controls = NULL, readNBeads = FALSE, verbose = FALSE)

Arguments

prefix.path

sample prefix without _Grn.idat and _Red.idat

platform

EPIC, HM450 and HM27 etc.

manifest

optional design manifest file

controls

optional control probe manifest file

readNBeads

whether to read number of beads

verbose

be verbose? (FALSE)

Value

a SigSet

Examples

sset <- readIDATpair(sub('_Grn.idat','',system.file(
    "extdata", "4207113116_A_Grn.idat", package = "sesameData")))

[Package sesame version 1.2.0 Index]