inferSexKaryotypes {sesame} | R Documentation |
The function takes a SigSet
and infers the sex chromosome Karyotype
and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI
are inferred relatively independently. This function gives a more detailed
look of potential sex chromosome aberrations.
inferSexKaryotypes(sset)
sset |
a |
Karyotype string, with XCI
sset <- sesameDataGet('EPIC.1.LNCaP')$sset inferSexKaryotypes(sset)