sesamize {sesame} | R Documentation |
"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet
sesamize(rgSet, naFrac = 1, BPPARAM = SerialParam())
rgSet |
an RGChannelSet, perhaps with colData of various flavors |
naFrac |
maximum NA fraction for a probe before it gets dropped (1) |
BPPARAM |
get parallel with MulticoreParam(n) |
a sesamized GenomicRatioSet
# Takes about two minutes to process 48 samples on my 48-core desktop ## Not run: if (require(FlowSorted.CordBloodNorway.450k)) { sesamize( FlowSorted.CordBloodNorway.450k[,1:2], BPPARAM=MulticoreParam(2)) } ## End(Not run)