sesamize {sesame}R Documentation

"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

Description

"fix" an RGChannelSet (for which IDATs may be unavailable) with Sesame The input is an RGSet and the output is a sesamized minfi::GenomicRatioSet

Usage

sesamize(rgSet, naFrac = 1, BPPARAM = SerialParam())

Arguments

rgSet

an RGChannelSet, perhaps with colData of various flavors

naFrac

maximum NA fraction for a probe before it gets dropped (1)

BPPARAM

get parallel with MulticoreParam(n)

Value

a sesamized GenomicRatioSet

Examples

# Takes about two minutes to process 48 samples on my 48-core desktop

## Not run: 
    if (require(FlowSorted.CordBloodNorway.450k)) {
        sesamize(
            FlowSorted.CordBloodNorway.450k[,1:2], BPPARAM=MulticoreParam(2))
    }

## End(Not run)

[Package sesame version 1.2.0 Index]