readIDATpair {sesame} | R Documentation |
The function takes a prefix string that are shared with _Grn.idat
and _Red.idat. The function returns a SigSet
.
readIDATpair(prefix.path, platform = "", manifest = NULL, controls = NULL, readNBeads = FALSE, verbose = FALSE)
prefix.path |
sample prefix without _Grn.idat and _Red.idat |
platform |
EPIC, HM450 and HM27 etc. |
manifest |
optional design manifest file |
controls |
optional control probe manifest file |
readNBeads |
whether to read number of beads |
verbose |
be verbose? (FALSE) |
a SigSet
sset <- readIDATpair(sub('_Grn.idat','',system.file( "extdata", "4207113116_A_Grn.idat", package = "sesameData")))