cxds_bcds_hybrid {scds}R Documentation

Find doublets/multiples in UMI scRNA-seq data;

Description

Annotates doublets/multiplets using the hybrid approach

Usage

cxds_bcds_hybrid(sce, cxds_args = NULL, bcds_args = NULL)

Arguments

sce

single cell experiment (SingleCellExperiment) object to analyze; needs counts in assays slot.

cxds_args

list, arguments for cxds function in list form. Default: NULL

bcds_args

list, arguments for bcds function in list form. Default: NULL

Value

sce input sce object SingleCellExperiment with doublet scores added to colData as "hybrid_score" column.

Examples

data("sce_chcl")
## create small data set using only 100 cells
sce_chcl_small = sce_chcl[, 1:100]
sce_chcl_small = cxds_bcds_hybrid(sce_chcl_small)

[Package scds version 1.0.0 Index]