sracipePlotParamBifur {sRACIPE} | R Documentation |
Plot the expression of the genes against parameter values to understand the effect of parameters on the gene expressions.
sracipePlotParamBifur(.object, paramName, data = NULL, paramValue = NULL, assignedClusters = NULL, plotToFile = FALSE) ## S4 method for signature 'RacipeSE' sracipePlotParamBifur(.object, paramName, data = NULL, paramValue = NULL, assignedClusters = NULL, plotToFile = FALSE)
.object |
RacipeSE object generated by
|
paramName |
character. The name of the parameter to be plotted. |
data |
(optional) dataframe. Default rSet geneExpression. The data to be plotted. For example, use rSet$stochasticSimulations$[noise] to plot the stochastic data. |
paramValue |
(optional) Dataframe. The parameter values if rSet$params is not to be used. |
assignedClusters |
(optional) Dataframe. The cluster assignment of data. |
plotToFile |
(optional) logical. Default |
none
data("demoCircuit") ## Not run: rSet <- sRACIPE::sracipeSimulate(circuit = demoCircuit, numModels = 100, plots=FALSE, plotToFile = FALSE) rSet <- sRACIPE::sracipeNormalize(rSet) sracipePlotParamBifur(rSet, "G_A") ## End(Not run)