fcFilter {rqubic} | R Documentation |
Filter Biclusters by feature and concition counts. Biclusters with fewer features or conditions than specified thresholds are removed.
fcFilter(object, ...)
object |
A |
... |
Two parameters are accepted: |
A Biclust
object.
Jitao David Zhang <jitao_david.zhang@roche.com>
data(sample.ExpressionSet, package="Biobase") rqubic.example.discret <- quantileDiscretize(sample.ExpressionSet, rank=2L) rqubic.example.sel.seeds <- generateSeeds(rqubic.example.discret, minColWidth=2L) rqubic.example.blocks <- quBicluster(rqubic.example.sel.seeds, rqubic.example.discret, report.no=200L, filter.proportion=0.1) print(rqubic.example.blocks) print(fcFilter(rqubic.example.blocks,feat.min=10)) print(fcFilter(rqubic.example.blocks,cond.min=2)) print(fcFilter(rqubic.example.blocks,feat.min=10, cond.min=2))