fromW4M {ropls} | R Documentation |
Creating a ExpressionSet object from the 3 'dataMatrix.tsv', 'sampleMetadata.tsv' and 'variableMetadata.tsv' tabulated files
fromW4M(dirC, namePatternC = "", fileTableNamesVc = c("dataMatrix", "sampleMetadata", "variableMetadata"), verboseL = TRUE)
dirC |
Character: directory containing the 3 .tsv files |
namePatternC |
Character: optional file name pattern common to all three file names (e.g., when you want to distinguish between two sets of files within the same directory) |
fileTableNamesVc |
Vector of characters: if your file names do not contain the standard 'dataMatrix', 'sampleMetadata', and 'variableMetadata' patterns (e.g. if you use 'profile', 'observation', and 'feature' instead), please indicate them here |
verboseL |
Logical: should comments be printed? |
ExpressionSet instance
Etienne Thevenot, etienne.thevenot@cea.fr
sacSet <- fromW4M(file.path(path.package("ropls"), "extdata"))