getConcentricList {rTRM}R Documentation

Returns a list with nodes membership to be used in a graph with a concentric layout

Description

Specify target and enriched motifs and returns a list with circle membership. This information is used by layout.concentric to position the nodes in plots.

Usage

getConcentricList(g, t, e, max.size = 60, order.by = "label")

Arguments

g

graph to layout (extract the nodes).

t

list of target nodes (will go in the center).

e

list of enriched nodes (will go in the periphery).

max.size

maximum number of nodes per layer.

order.by

ordering attribute for list before split.

Author(s)

Diego Diez


[Package rTRM version 1.22.0 Index]