readBiopax {rBiopaxParser} | R Documentation |
This function reads in a Biopax .owl file and generates the internal data.frame format used in this package. This function can take a while with really big Biopax files like NCIs Pathway Interaction Database or Reactome. In almost every case this is your starting point. Returns a biopax model, which is a list with named elements:
The data.frame representing the biopax in R
RDF Namespace
OWL Namespace
Biopax Namespace
File name
readBiopax(file, verbose = TRUE)
file |
string. File name |
verbose |
logical. Output messages about how parsing is going and so on. |
A biopax model
Frank Kramer
## Not run: biopax = readBiopax(file="biopaxmodel.owl") ## Not run: biopax