listInteractionComponents {rBiopaxParser} | R Documentation |
This function returns a (unique) data.frame listing IDs, names and classes of all components of the supplied interaction.
listInteractionComponents(biopax, id, splitComplexes = TRUE, returnIDonly = FALSE, biopaxlevel = 3)
biopax |
A biopax model |
id |
string. A complex ID |
splitComplexes |
logical. If TRUE complexes are split up into their components and the added to the listing. |
returnIDonly |
logical. If TRUE only IDs of the components are returned. This saves tiem for looking up names for every single ID. |
biopaxlevel |
integer. Set the biopax level here if you supply a data.table directly. |
data.frame
Frank Kramer
# load data data(biopaxexample) listInteractionComponents(biopax, id="ex_i_100036_activator_1")