GC_content {qckitfastq}R Documentation

Calculates GC content percentage for each read in the dataset.

Description

Calculates GC content percentage for each read in the dataset.

Usage

GC_content(infile, output_file = NA)

Arguments

infile

the object that is the path to the FASTQ file

output_file

File to write results to. Default NA.

Value

Data frame with read ID and GC content of each read.

Examples


infile <- system.file("extdata", "10^5_reads_test.fq.gz",
    package = "qckitfastq")
head(GC_content(infile))


[Package qckitfastq version 1.0.1 Index]