clusterPlotR {projectR} | R Documentation |
plotting function for clustering objects
clusterPlotR(cData, cls, x, NC, ...) ## S4 method for signature 'ANY,kmeans' clusterPlotR(cData = NA, cls = NA, x = NA, NC = NA, annoIndx = NA, label = NULL, ...) ## S4 method for signature 'ANY,hclust' clusterPlotR(cData = NA, cls = NA, x = NA, NC = NA, annoIndx = NA, label = NULL, ...)
cData |
data used to get clusters |
cls |
a cluster (kmeans or hclust) object |
x |
a vector of length equal to number of samples to use for plotting |
NC |
vector of integers indicating which clusters to use |
... |
additional parameters for plotting. ex. pch,cex,col,labels, xlab, etc. |
annoIndx |
vector indexing into subsets for plotting |
label |
character vector to use for plotting text, defaults is NULL |
A plot of the mean behavior for each cluster
## Not run: k.RNAseq6l3c3t<-kmeans(p.RNAseq6l3c3t,22) clusterPlotR(p.RNAseq6l3c3t, cls=k.RNAseq6l3c3t,NC=1,x=pd.RNAseq6l3c3t$days, col=pd.RNAseq6l3c3t$color) ## End(Not run)