OmicsPathway-class {pathwayPCA}R Documentation

An S4 class for mass spectrometry or bio-assay data and gene pathway lists

Description

An S4 class for mass spectrometry or bio-assay data and gene pathway lists

Slots

assayData_df

An N \times p data frame with named columns.

sampleIDs_char

A character vector with the N sample names.

pathwayCollection

A list of known gene pathways with three or four elements:

trimPathwayCollection

A subset of the list stored in the pathwayCollection slot. This list will have pathways that only contain genes that are present in the assay data frame.

See Also

CreateOmics


[Package pathwayPCA version 1.0.0 Index]