mrkHClust {pRoloc} | R Documentation |
This functions calculates an average protein profile for each
marker class (proteins of unknown localisation are ignored) and
then generates a dendrogram representing the relation between
marker classes. The colours used for the dendrogram labels are
taken from the default colours (see getStockcol
) so
as to match the colours with other spatial proteomics
visualisations such as plot2D
.
mrkHClust(object, fcol = "markers", distargs, hclustargs, method = mean, plot = TRUE, ...)
object |
An instance of class |
fcol |
Feature meta-data label (fData column name) defining
the groups to be differentiated using different
colours. Default is |
distargs |
A |
hclustargs |
A |
method |
A |
plot |
A |
... |
Additional parameters passed when plotting the
|
Invisibly returns a dendrogram object, containing the
hierarchical cluster as computed by hclust
.
Laurent Gatto
library("pRolocdata") data(dunkley2006) mrkHClust(dunkley2006)