snpToContinuous {omicRexposome}R Documentation

Transforms the discrete genotype from a snpSet to a matrix of a continuous variable.

Description

The function converts the categorical variable of SNPs to a continuous variable by normalizing each SNP as described in Abraham G. and Inouye M. 2014 (DOI: 10.1371/journal.pone.0093766).

Usage

snpToContinuous(snpSet, verbose = FALSE)

Arguments

snpSet

An object of class snpSet with set calls slot .

verbose

If set to TRUE, messages will be shown.

Value

An matrix of the calls of the SNPs converted to a continuous variable.

See Also

crossomics use this function


[Package omicRexposome version 1.6.0 Index]