pLeft-methods {npGSEA} | R Documentation |
pLeft
~~This function returns the left-sided p-value for the corresponding GeneSet
or a list of p-values for a GeneSetCollection
.
This method is only applicable for the normal and beta approximation methods.
pLeft(object)
object |
An object of type |
signature(object = "npGSEAResultNorm")
Returns a left-sided p-value
for a npGSEAResultNorm
object
signature(object = "npGSEAResultBeta")
Returns a left-sided p-value
for a npGSEAResultBeta
object
signature(object = "npGSEAResultNormCollection")
Returns a list of
left-sided p-values for a npGSEAResultNormCollection
objects (1 for each set)
signature(object = "npGSEAResultBetaCollection")
Returns a list of
left-sided p-values for a npGSEAResultBetaCollection
objects (1 for each set)
Jessica L. Larson
npGSEAResultNorm
-class, pRight
set.seed(15) yFactor <- as.factor( c(rep("treated", 5), rep("control", 5)) ) xData <- matrix(data=rnorm(length(letters)*10) ,nrow=length(letters), ncol=10) rownames(xData) <- letters geneSetABC15 <- GeneSet(geneIds=letters[1:15], setName="setABC15") res <- npGSEA(x = xData, y = yFactor, set = geneSetABC15) pLeft (res)