npGSEAResultBeta-class {npGSEA} | R Documentation |
"npGSEAResultBeta"
Objects of this class store results from running npGSEA with the beta approximation.
Objects can be created by calls of npGSEA
.
geneSetName
:Object of class "character"
, the name of the geneSet
betaStat
:Object of class "numeric"
, the test statistic, scaled to the corresponding beta distribution
ThatGw
:Object of class "numeric"
, the test statistic for the set
varThatGw
:Object of class "numeric"
, the variance of ThatGw
alpha
:Object of class "numeric"
, the alpha value
beta
:Object of class "numeric"
, the beta value
pLeft
:Object of class "numeric"
, the p-value for the left-side hypothesis
pRight
:Object of class "numeric"
, the p-value for the right-side hypothesis
pTwoSided
:Object of class "numeric"
, the p-value for the two-sided hypothesis
xSet
:Object of class "matrix"
, the centered and scaled x data for this set
betaHats
:Object of class "vector"
, the betaHats for each gene in this set
Jessica L. Larson
Jessica L Larson and Art B Owen: Moment based gene set tests. BMC Bioinformatics 2015, 16:132. http://www.biomedcentral.com/1471-2105/16/132
showClass("npGSEAResultBeta")