formatSingleHgvs {myvariant} | R Documentation |
Create a single HGVS ID for a variant from chromosome, position, reference and alternate alleles.
formatSingleHgvs(chrom, pos, ref, alt, mutant_type=FALSE)
chrom |
Chromosome. |
pos |
Position of the variant on the reference genome (hg19). |
ref |
Reference allele. |
alt |
Alternate allele. |
mutant_type |
Logical indicating whether to return the type of mutation along with the HGVS ID. |
returns a string
https://myvariant.info http://www.hgvs.org/mutnomen/recs-DNA.html
## return HGVS ID for a variant formatSingleHgvs(1, 35367, "G", "A")