diff_test_helper {monocle}R Documentation

Helper function for parallel differential expression testing

Description

test

Usage

diff_test_helper(x, fullModelFormulaStr, reducedModelFormulaStr,
  expressionFamily, relative_expr, weights, disp_func = NULL,
  verbose = FALSE)

Arguments

x

test

fullModelFormulaStr

a formula string specifying the full model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.

reducedModelFormulaStr

a formula string specifying the reduced model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.

expressionFamily

specifies the VGAM family function used for expression responses

relative_expr

Whether to transform expression into relative values

weights

test

disp_func

test

verbose

Whether to show VGAM errors and warnings. Only valid for cores = 1.


[Package monocle version 2.12.0 Index]