extract_good_branched_ordering {monocle} | R Documentation |
Extract a linear ordering of cells from a PQ tree
extract_good_branched_ordering(orig_pq_tree, curr_node, dist_matrix, num_branches, reverse_main_path = FALSE)
orig_pq_tree |
The PQ object to use for ordering |
curr_node |
The node in the PQ tree to use as the start of ordering |
dist_matrix |
A symmetric matrix containing pairwise distances between cells |
num_branches |
The number of outcomes allowed in the trajectory. |
reverse_main_path |
Whether to reverse the direction of the trajectory |