estimateDispersionsForCellDataSet {monocle} | R Documentation |
Helper function to estimate dispersions
estimateDispersionsForCellDataSet(cds, modelFormulaStr, relative_expr, min_cells_detected, removeOutliers, verbose = FALSE)
cds |
a CellDataSet that contains all cells user wants evaluated |
modelFormulaStr |
a formula string specifying the model to fit for the genes. |
relative_expr |
Whether to transform expression into relative values |
min_cells_detected |
Only include genes detected above lowerDetectionLimit in at least this many cells in the dispersion calculation |
removeOutliers |
a boolean it determines whether or not outliers from the data should be removed |
verbose |
Whether to show detailed running information. |