boxplot_abundance {microbiome} | R Documentation |
Plot phyloseq abundances.
boxplot_abundance(d, x, y, line = NULL, violin = FALSE, na.rm = FALSE, show.points = TRUE)
d |
|
x |
Metadata variable to map to the horizontal axis. |
y |
OTU to map on the vertical axis |
line |
The variable to map on lines |
violin |
Use violin version of the boxplot |
na.rm |
Remove NAs |
show.points |
Include data points in the figure |
The directionality of change in paired boxplot is indicated by the colors of the connecting lines.
A ggplot
plot object
data(peerj32) p <- boxplot_abundance(peerj32$phyloseq, x='time', y='Akkermansia', line='subject')