mgFeatures-class {metagenomeFeatures} | R Documentation |
Class defines taxonomic annotation and reference sequence data for classified OTUs. The class extends the DataFrame class with a slot with a subset of the reference database sequences and phylogenetic tree for taxonomically classified OTUs, along with an additional slot for metadata including information on the database source.
mgFeatures(taxa = data.frame(), tree = NULL, seq = NULL, metadata)
taxa |
a DataFrame-class or object that can be coerced into a DataFrame |
tree |
a phylo-class object with phylogenetic tree |
seq |
DNAStringSet-object with feature sequences |
metadata |
a list |
mgFeature class object
mgFeatures-class object
data(mock_mgF) mgFeatures(taxa = data.frame(), metadata = list())