mock_query_df {metagenomeFeatures} | R Documentation |
Example query_df
for use in generating a mgFeatures-class
object using the annotateFeatures MgDb-class method. The
dataset contains the OTU ids and Greengenes database version 13.5 ids.
Specifically, the OTU centers came from a mock community dataset from the
study Bokulich et al. 2013, the OTU ids were extracted from a biom file
downloaded from QIITA (https://qiita.ucsd.edu).
mock_query_df
data.frame
Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013): 57-59.
data(mock_query_df)