mock_mgF {metagenomeFeatures} | R Documentation |
Example mgFeatures-class object generated using the annotateFeatures MgDb-class method. The dataset contains the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU centers came from a mock community dataset from the study Bokulich et al. 2013, the OTU ids were extracted from a biom file downloaded from QIITA (https://qiita.ucsd.edu).
mock_mgF
mgFeatures
Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013): 57-59.
data(mock_mgF)