exon_by_gene_with_observed_transcripts {metagene} | R Documentation |
Extract exons by genes for which data are available in quantification files
exon_by_gene_with_observed_transcripts(adb, quantification_files)
adb |
A valid |
quantification_files |
the quantification files. A vector of pathes. |
A GRangesList
object containing exons by genes for which
data are available in quantification files.
## Not run: require(EnsDb.Hsapiens.v86) edb <- EnsDb.Hsapiens.v86 quantification_files <- 'file_path' ebgwot <- exon_by_gene_with_observed_transcripts(edb, quantification_files) bed_file_content_gr <- GRanges("chr16",ranges = IRanges(start=23581002, end=23596356)) bed_file_filter(ebgwot, bed_file_content_gr) ## End(Not run)