dotplot {maser} | R Documentation |
Dotplot representation of splicing events.
dotplot(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), fdr = 0.05, deltaPSI = 0.1)
events |
a maser object. |
type |
character indicating splice type. Possible values are
|
fdr |
numeric, FDR (False Discovery Rate) cutoff. |
deltaPSI |
numeric, absolute minimum PSI (Percent spliced-in) change |
a ggplot object.
path <- system.file("extdata", file.path("MATS_output"), package = "maser") hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h")) hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5) dotplot(hypoxia_filt, type = "SE")