maser {maser} | R Documentation |
Create a maser object by importing rMATS splicing events.
maser(path, cond_labels, ftype = c("ReadsOnTargetAndJunctionCounts", "JunctionCountOnly", "JCEC", "JC"))
path |
a character specifiying the folder containing rMATS output files. |
cond_labels |
a character vector of length 2 describing labels for experimental conditions. |
ftype |
a character indicating the rMATS file type.
Possible values are |
This function creates a maser object by importing rMATS output.
ftype
indicates which rMATS files to import.
ReadsOnTargetandJunction or JunctionCountOnly
are used in rMATS 3.2.5
or lower. Newer versions (>4.0.1) use "JCEC" or "JC"
nomenclature.
A maser object.
path <- system.file("extdata", file.path("MATS_output"), package = "maser") hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))