pca {maser}R Documentation

Prinicipal component analysis of PSI distributions.

Description

Prinicipal component analysis of PSI distributions.

Usage

pca(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"))

Arguments

events

a maser object.

type

character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")

Value

a ggplot object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
pca(hypoxia_filt, type = "RI")

[Package maser version 1.2.0 Index]