compbiasPlot {manta} | R Documentation |
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compbiasPlot(x, pair=nv(levels(x$samples$group)[1:2] , c('ref','obs')), meta.lev='phylum', meta.lev.lim=nrow(x$meta.sum[[meta.lev]]), breaks=10, xlim=c(0,.5), type='box', col=NULL, ...)
x |
a MANTA object. |
pair |
named vector of the pair of conditions of interest |
meta.lev |
the taxinomic rank to plot. |
meta.lev.lim |
the taxinomic rank for diversity measure. |
breaks |
breaks for the histogram. |
xlim |
x axis limits. |
type |
type of plot. |
col |
colors |
... |
additional params. |
a compositional bias plot
DGEList, manta
manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta") load(manta.path) compbiasPlot(x, meta.lev='genus_sp')