biocarta {loci2path}R Documentation

eQTL geneset enrichment query demo data

Description

Demo Data to show how to perform eQTL-geneset enrichment query.

Usage

data(loci2path.demo)

Format

An object of class geneSet of length 1.

Details

eqtl.set.list A list of eQTLset objects; eQTL data are collected from GTeX.

biocarta A Geneset object; Geneset are from Broad Institute's MSigDB: curated gene set, category 'cp': BIOCARTA

query.gr A Genomic Region object; Query regions are from immunoBase, crohn's disease.

Examples

data(loci2path.demo)

[Package loci2path version 1.4.0 Index]