brca {hipathia} | R Documentation |
A dataset containing a matrix with the Gene expression of 40 samples from the BRCA-US project from The Cancer Genome Atlas (TCGA), and their experimental design, containing 20 "Tumor" samples 20 "Normal" samples.
data(brca)
SummarizedExperiment. The assay is a matrix with 40 columns and
18638 rows. Row names are Entrez IDs and column names are the TCGA
identifyers of the samples. The colData() is a data.frame with 1 column and
40 rows, including the experimental design of the 40 samples from the BRCA-US
project from TCGA. Field group
is the type of sample, either "Tumor"
or "Normal".
The gene expression matrix includes 40 samples. The data has been log-transformed and normalized with TMM.
SummarizedExperiment including a matrix with 40 columns and 18638 rows. Row names are Entrez IDs and column names are the TCGA identifyers of the samples.