ggcyto.GatingSet {ggcyto} | R Documentation |
Create a new ggcyto plot from a GatingSet
## S3 method for class 'GatingSet' ggcyto(data, mapping, subset = "_parent_", ...) ## S3 method for class 'GatingSetList' ggcyto(data, ...) ## S3 method for class 'GatingHierarchy' ggcyto(data, ...)
data |
GatingSet to plot |
mapping |
default list of aesthetic mappings (these can be colour, size, shape, line type – see individual geom functions for more details) |
subset |
character that specifies the node path or node name in the GatingSet. Default is "_parent_", which will be substitute with the actual node name based on the geom_gate layer to be added later. |
... |
ignored |
a ggcyto_GatingSet object which is a subclass of ggcyto_flowSet class.
dataDir <- system.file("extdata",package="flowWorkspaceData") gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE)) # 2d plot ggcyto(gs, aes(x = CD4, y = CD8), subset = "CD3+") + geom_hex(bins = 64) # 1d plot ggcyto(gs, aes(x = CD4), subset = "CD3+") + geom_density()