exportSEA {gep2pep}R Documentation

Export CondSEA or PathSEA results to XLS format

Description

The XLS output includes the full CondSEA or PathSEA results, together with additional gene set information for the CondSEA. If the PathSEA or CondSEA analysis was performed with details=TRUE, details will be reported in the XLS file. This function requires the WriteXLS library.

Usage

exportSEA(rp, results, outname = NULL)

Arguments

rp

A repository created by createRepository.

results

The output of CondSEA or PathSEA.

outname

Name of the XLS file to be created.

Value

Nothing.

See Also

CondSEA, PathSEA

Examples


db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

## Not run: 
exportSEA(rp, psea)

## End(Not run)

unlink(repo_path, TRUE)


[Package gep2pep version 1.4.0 Index]