manhWngr {gQTLstats} | R Documentation |
manhattan plot with named GRanges
manhWngr(store, probeid = "ENSG00000183814.10", sym = "LIN9", fdrsupp, namedGR, slstyle = "NCBI", xlab.in = sym, ylab.in = "-log10 FDR", applyFDRfilter = TRUE)
store |
instance of |
probeid |
name of feature identifier to use for cis association |
sym |
symbol for feature identifier |
fdrsupp |
instance of |
namedGR |
|
slstyle |
seqlevelsStyle |
xlab.in |
x axis label |
ylab.in |
y axis label |
applyFDRfilter |
if TRUE, use the filter defined in the |
... |
additional arguments for plotting |
require(geuvStore2) require(gQTLBase) store = makeGeuvStore2() data(hmm878) data(filtFDR) manhWngr(store, fdrsupp=filtFDR, namedGR=hmm878)