compileCopyCountSegments {exomeCopy} | R Documentation |
A short function which extracts the segments of constant copy count
using the copyCountSegments
function on a named list of
named lists containing fitted ExomeCopy objects. See vignette for a
full example of multiple samples and chromosomes.
compileCopyCountSegments(fit.list)
fit.list |
A named list of named lists. The outer list indexes patients, while the inner list indexes sequences/chromosomes. |
A GRanges object of all segments across samples and chromosomes.
example(exomeCopy) # this function requires a named list of named lists # as constructed in the vignette fit.list <- list(sample1 = list(chr1 = fit)) CNV.segments <- compileCopyCountSegments(fit.list)