tcga_colon_curves {epivizr}R Documentation

Example methylation data (smoothed methylation levels) for epivizr vignette

Description

Example results from methylation analysis of human chromosome 11 using the minfi-package package of TCGA 450k beadarray samples. This object contains probe cluster level methylation estimates from blockFinder.

Usage

tcga_colon_curves

Format

A GRanges object with 7135 ranges and mcols:

id

probe cluster id

type

probe cluster type

blockgroup

probe cluster block group

diff

raw methylation percentage difference between normal and tumor

smooth

smooth methylation percentage difference between normal and tumor

normalMean

mean methylation estimate for normal samples

cancerMean

mean methylation estimate for cancer samples

Value

A GRanges object.

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/


[Package epivizr version 2.14.0 Index]