calcLDSizeFactors {diffloop} | R Documentation |
calcLDSizeFactors
takes a loops object computes size
factors based for each sample
calcLDSizeFactors(dlo) ## S4 method for signature 'loops' calcLDSizeFactors(dlo)
dlo |
A loops object with unnormalized size factors |
This function updates the loops
object with new
sizeFactor
values for
each sample in the colData
slot using a method identical to that
employed in DESeq2.
A loops object with new size factors in colData
# Computing normalizing factors from the full ChIA-PET Data rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/') load(rda) loops.small <- calcLDSizeFactors(loops.small)