loops-class {diffloop}R Documentation

A class to represent ChIA-PET interaction data and annotations

Description

A class to represent ChIA-PET interaction data and annotations

Slots

anchors

A GRanges object describing loop anchor locations

interactions

A matrix. Each row is an interaction between two anchors

counts

A matrix with the number paired-end reads per loop per sample

colData

A data.frame with features (colums) for each sample (rows)

rowData

A data.frame with features (columns) for each loop (rows)


[Package diffloop version 1.12.0 Index]