plotContigOrder,ContigOrdering-method {contiBAIT} | R Documentation |
Plot ordering of contigs within a single linkage group.
## S4 method for signature 'ContigOrdering' plotContigOrder(contigOrder, lg = "all", verbose = TRUE)
contigOrder |
matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot |
lg |
Integer specifying the linkage group by which to plot. Default is all |
verbose |
prints messages to the terminal (default is TRUE) |
A ggplot object (which will be plotted automatically if not assigned).
#Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome data("exampleContigOrder") plotContigOrder(exampleContigOrder[[1]], lg=1)