suggest_best_k-ConsensusPartitionList-method {cola}R Documentation

Suggest the best number of partitions

Description

Suggest the best number of partitions

Usage

## S4 method for signature 'ConsensusPartitionList'
suggest_best_k(object, jaccard_index_cutoff = 0.95)

Arguments

object

A ConsensusPartitionList-class object.

jaccard_index_cutoff

The cutoff for Jaccard index compared to previous k.

Details

It basically gives the best k for each combination of top-value method and partition method by calling suggest_best_k,ConsensusPartition-method.

1-PAC score higher than 0.95 is treated as very stable partition and higher than 0.9 is treated as stable partition.

Value

A data frame with the best k and other statistics for each combination of methods.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

data(cola_rl)
suggest_best_k(cola_rl)

[Package cola version 1.0.1 Index]