[.ConsensusPartitionList {cola}R Documentation

Subset a ConsensusPartitionList object

Description

Subset a ConsensusPartitionList object

Usage

## S3 method for class 'ConsensusPartitionList'
x[i, j, drop = TRUE]

Arguments

x

A ConsensusPartitionList-class object.

i

Index for top-value methods, character or nummeric.

j

Index for partition methods, character or nummeric.

drop

Whether drop class

Details

For a specific combination of top-value method and partition method, you can also subset by e.g. x['sd:hclust'].

Value

A ConsensusPartitionList-class object or a ConsensusPartition-class object.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

data(cola_rl)
cola_rl[c("sd", "MAD"), c("hclust", "kmeans")]
cola_rl["sd", "kmeans"] # a ConsensusPartition object
cola_rl["sd:kmeans"] # a ConsensusPartition object
cola_rl[["sd:kmeans"]] # a ConsensusPartition object
cola_rl["sd", "kmeans", drop = FALSE] # still a ConsensusPartitionList object
cola_rl["sd:kmeans", drop = FALSE] # still a ConsensusPartitionList object
cola_rl["sd", ]
cola_rl[, "hclust"]
cola_rl[1:2, 1:2]

[Package cola version 1.0.1 Index]