suggest_best_k-ConsensusPartitionList-method {cola} | R Documentation |
Suggest the best number of partitions
## S4 method for signature 'ConsensusPartitionList' suggest_best_k(object, jaccard_index_cutoff = 0.95)
object |
A |
jaccard_index_cutoff |
The cutoff for Jaccard index compared to previous k. |
It basically gives the best k for each combination of top-value method and partition method by calling suggest_best_k,ConsensusPartition-method
.
1-PAC score higher than 0.95 is treated as very stable partition and higher than 0.9 is treated as stable partition.
A data frame with the best k and other statistics for each combination of methods.
Zuguang Gu <z.gu@dkfz.de>
data(cola_rl) suggest_best_k(cola_rl)