cola_report-ConsensusPartitionList-method {cola} | R Documentation |
Make HTML report from the ConsensusPartitionList object
## S4 method for signature 'ConsensusPartitionList' cola_report(object, output_dir = getwd(), mc.cores = 1, env = parent.frame())
object |
A |
output_dir |
The output directory where the report is put. |
mc.cores |
Multiple cores to use. |
env |
Where The objects in the report are found, internally used. |
The ConsensusPartitionList-class
object contains results for all top-value methods and all partition methods.
This function generates a HTML report which contains all plots and tables for every combination
of top-value method and partition method.
The report generation may take a while because it generates A LOT of heatmaps.
Examples of reports can be found at https://jokergoo.github.io/cola_examples/
No value is returned.
Zuguang Gu <z.gu@dkfz.de>
## Not run: data(cola_rl) cola_report(cola_rl[c("sd", "MAD"), c("hclust", "skmeans")], output_dir = "~/test_cola_cl_report") ## End(Not run)