get_classes-ConsensusPartitionList-method {cola}R Documentation

Get class IDs from the ConsensusPartitionList object

Description

Get class IDs from the ConsensusPartitionList object

Usage

## S4 method for signature 'ConsensusPartitionList'
get_classes(object, k)

Arguments

object

A ConsensusPartitionList-class object.

k

Number of partitions.

Details

The class IDs are inferred by merging partitions from all methods by weighting the mean silhouette scores in each method.

Value

A data frame with class IDs and other columns which are entropy of the percent membership matrix and the silhouette scores which measure the stability of a sample to stay in its group.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

data(cola_rl)
get_classes(cola_rl, k = 2)

[Package cola version 1.0.1 Index]