test_to_known_factors-HierarchicalPartition-method {cola}R Documentation

Test correspondance between predicted classes and known factors

Description

Test correspondance between predicted classes and known factors

Usage

## S4 method for signature 'HierarchicalPartition'
test_to_known_factors(object, known = get_anno(object[1]),
    depth = 2:max_depth(object), verbose = FALSE)

Arguments

object

A HierarchicalPartition-class object.

depth

Depth of the hierarchy.

known

A vector or a data frame with known factors. By default it is the annotation table set in hierarchical_partition.

verbose

Whether to print messages.

Value

A data frame with columns:

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

data(cola_rh)
test_to_known_factors(cola_rh, known = 1:60)

[Package cola version 1.0.1 Index]