heatmapCountCorrelation {chromstaR}R Documentation

Read count correlation heatmap

Description

Heatmap of read count correlations (see cor).

Usage

heatmapCountCorrelation(model, cluster = TRUE)

Arguments

model

A multiHMM or combinedMultiHMM object or file that contains such an object.

cluster

Logical indicating whether or not to cluster the heatmap.

Value

A ggplot object.

See Also

plotting

Examples

## Get an example multiHMM ##
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
                    package="chromstaR")
model <- get(load(file))
## Plot count correlations as heatmap
heatmapCountCorrelation(model)


[Package chromstaR version 1.10.0 Index]