multivariateSegmentation {chromstaR}R Documentation

Multivariate segmentation

Description

Make segmentation from bins for a multiHMM object.

Usage

multivariateSegmentation(bins, column2collapseBy = "state")

Arguments

bins

A GRanges-class with binned read counts.

column2collapseBy

The number of the column which will be used to collapse all other inputs. If a set of consecutive bins has the same value in this column, they will be aggregated into one bin with adjusted genomic coordinates.

Value

A GRanges-class with segmented regions.


[Package chromstaR version 1.10.0 Index]