plotDeviationsTsne {chromVAR}R Documentation

plotDeviationsTsne

Description

plots sample similarity tsne

Usage

plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
  annotation_name = NULL, shiny = interactive())

Arguments

object

deviations result object

tsne

result from deviationsTsne

var_df

variability result

sample_column

column name for sample data – colData(object) – to be used for coloring points

annotation_name

name of chromVAR annotation for coloring points

shiny

return shiny app? otherwise return static plots

Value

shiny app or plots

Author(s)

Alicia Schep


[Package chromVAR version 1.6.0 Index]