tophatInstallation {chimera}R Documentation

A function to download tophat, bowtie and samtools

Description

A function allowing the download and installation of tophat, bowtie and samtools in chimera package folder. The function also creates soft links in the user bin folder to allow the call of the above mentioned programs.

Usage

tophatInstallation(binDir, os=c("unix","mac"))

Arguments

binDir

The user bin folder

os

The supported operating systems

Author(s)

Raffaele A Calogero

Examples

#tophatInstallation(binDir="/somewhere/inyourpc/bin", os="mac")

[Package chimera version 1.26.0 Index]