filterSamReads {chimera} | R Documentation |
A function to filter SAM or BAM files using picard-tools
filterSamReads(input, output, filter=c("includeAligned","excludeAligned"))
input |
SAM/BAM file to be validated |
output |
file name in which to save the filtered reselts |
filter |
type of filter |
A filtered SAM/BAM.
Raffaele A Calogero
# filterSamReads(input="kd2_accepted_hits2.sam", output="kd2_accepted_hits2_mapped.sam", filter="includeAligned")