pmQuality {charm} | R Documentation |
pmQuality calculates probe quality for each pm probe by comparing the total DNA signal (green) to the distribution of the background probe signals. 0 means lower than all background probes. 100 means higher than all background probes.
pmQuality(dat, channel="channel1", verbose=FALSE, idx=NULL)
dat |
a TilingFeatureSet object |
channel |
which channel to assess |
verbose |
logical value for whether or not to print message to screen |
idx |
vector of probe indices specifying which probes to evaluate. By default all pm probes are used. |
Martin Aryee <aryee@jhu.edu>, Peter Murakami, Rafael Irizarry
# See dmrFdr