plot_pca {cellity} | R Documentation |
Plots PCA of all features. Colors high and low quality cells based on outlier detection.
plot_pca(features, annot, pca, col, output_file)
features |
Input dataset containing features (cell x features) |
annot |
Matrix annotation of each cell |
pca |
PCA of features |
col |
color code indicating what color high and what low quality cells |
output_file |
where plot is stored |
This function plots PCA of all features + most informative features
Plots of PCA