plotPlate {cellGrowth} | R Documentation |
Plot of a well plate directly from a file using a lattice xyplot
plotPlate(file, labels = NULL, fileParser = readYeastGrower, getWellIds = getWellIdsTecan, calibration = identity, extractRowColumn = getRowColumn, cex = 0.05, scaleX = 1, scaleY = log2, strip.lines = 1.05, strip.cex = 0.8, xlab = "time", ylab = "log2(OD)", main = basename(file), scales = list(x = list(rot = 45)), ...)
file |
file name |
labels |
|
fileParser |
the file parser which reads the file generated by the machine |
getWellIds |
function or vector. If getWellIds is a
function its parameter is the parsed data of the file
parsed by |
calibration |
calibration function applied to the raw data (before scaleY is applied) |
extractRowColumn |
function which converts well identifiers into row and column names |
cex |
plot parameter |
scaleX |
factor which scales the x-axis |
scaleY |
function how to convert the y-axis ( e.g. log2 ) |
strip.lines |
height in lines of the labels |
strip.cex |
text-size of the labels |
xlab |
plot parameter |
ylab |
plot parameter |
main |
plot parameter |
scales |
plot parameter |
... |
optional plot parameter. See details |
All plot parameters are passed to the
xyplot
function
Andreas Neudecker
plotPlate( system.file("extdata", "tecan_genios.txt", package="cellGrowth"), fileParser=readGenios)