celdaHeatmap,celda_CG-method {celda}R Documentation

Heatmap for celda_CG

Description

Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.

Usage

## S4 method for signature 'celda_CG'
celdaHeatmap(counts, celdaMod, nfeatures = 25, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate. 'celdaMod'.

celdaMod

Celda object of class 'celda_CG'.

nfeatures

Integer. Maximum number of features to select for each module. Default 25.

...

Additional parameters.

Value

A list containing dendrograms and the heatmap grob

See Also

'celda_CG()' for clustering features and cells and 'celdaTsne()' for generating 2-dimensional coordinates.

Examples

data(celdaCGSim, celdaCGMod)
celdaHeatmap(celdaCGSim$counts, celdaCGMod)

[Package celda version 1.0.4 Index]