featureModuleLookup,celda_G-method {celda} | R Documentation |
Finds the module assignments of given features in a 'celda_G()' model.
## S4 method for signature 'celda_G' featureModuleLookup(counts, celdaMod, feature, exactMatch = TRUE)
counts |
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'. |
celdaMod |
Model of class 'celda_G'. |
feature |
Character vector. The module assignemnts will be found for feature names in this vector. |
exactMatch |
Logical. Whether an exact match or a partial match using 'grep()' is used to look up the feature in the rownames of the counts matrix. Default TRUE. |
List. Each element contains the module of the provided feature.
'celda_G()' for clustering features
data(celdaGSim, celdaGMod) module <- featureModuleLookup(celdaGSim$counts, celdaGMod, c("Gene_1", "Gene_XXX"))