rename_tips {ccfindR}R Documentation

Rename tips of trees with cell types

Description

Rename tips of trees with cell types

Usage

rename_tips(tree, rank, tip.labels)

Arguments

tree

List containing tree

rank

Rank value of which tip names are to be replaced

tip.labels

Vector of new names for tips

Value

List containing tree with updated tip labels

Examples

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree <- rename_tips(tree,rank=5,tip.labels=letters[seq_len(5)])
tree 

[Package ccfindR version 1.4.2 Index]