correlatePerCellLine {cTRAP}R Documentation

Correlate differential expression scores per cell line

Description

Correlate differential expression scores per cell line

Usage

correlatePerCellLine(cellLine, diffExprGenes, perturbations, method,
  pAdjustMethod = "BH")

Arguments

cellLine

Character: cell line(s)

diffExprGenes

Numeric: named vector of differentially expressed genes where the name of the vector are gene names and the values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics)

perturbations

l1000perturbations object: file with L1000 loaded perturbations (check loadL1000perturbations)

method

Character: correlation method

pAdjustMethod

Character: method for p-value adjustment (for more details, see p.adjust.methods; only used if method is spearman or pearson)

Value

Data frame with correlations statistics, p-value and q-value


[Package cTRAP version 1.2.0 Index]