prepareENCODEgeneExpression {cTRAP} | R Documentation |
Load an ENCODE gene expression data
prepareENCODEgeneExpression(samples)
samples |
List of loaded ENCODE samples |
Data frame containing gene read counts
data("ENCODEsamples") ## Download ENCODE metadata for a specific cell line and gene # cellLine <- "HepG2" # gene <- "EIF4G1" # ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene) ## Download samples based on filtered ENCODE metadata # ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata) prepareENCODEgeneExpression(ENCODEsamples)