ENCODEsamples {cTRAP} | R Documentation |
Sample of ENCODE samples obtained by running the following code:
# Download ENCODE metadata for a specific cell line and gene cellLine <- "HepG2" gene <- "EIF4G1" ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene) # Download samples based on filtered ENCODE metadata ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata) # Get small subset of whole dataset filter <- ENCODEsamples[[1]]$expected_count > 0 genes <- head(ENCODEsamples[[1]][filter, ])$gene_id for (k in seq(ENCODEsamples)) { ENCODEsamples[[k]] <- ENCODEsamples[[k]][ ENCODEsamples[[k]]$gene_id }