performGSAperCellLine {cTRAP}R Documentation

Perform gene set enrichment (GSA) per cell line

Description

Perform gene set enrichment (GSA) per cell line

Usage

performGSAperCellLine(cellLine, perturbations, pathways)

Arguments

cellLine

Character: cell line(s)

perturbations

l1000perturbations object: file with L1000 loaded perturbations (check loadL1000perturbations)

pathways

List of gene sets to check.

Value

Data frame containing gene set enrichment analysis (GSEA) results per cell line


[Package cTRAP version 1.2.0 Index]