prepareENCODEgeneExpression {cTRAP}R Documentation

Load an ENCODE gene expression data

Description

Load an ENCODE gene expression data

Usage

prepareENCODEgeneExpression(samples)

Arguments

samples

List of loaded ENCODE samples

Value

Data frame containing gene read counts

Examples

data("ENCODEsamples")
## Download ENCODE metadata for a specific cell line and gene
# cellLine <- "HepG2"
# gene <- "EIF4G1"
# ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)

## Download samples based on filtered ENCODE metadata
# ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata)

prepareENCODEgeneExpression(ENCODEsamples)

[Package cTRAP version 1.2.0 Index]