downloadENCODEsamples {cTRAP}R Documentation

Download ENCODE samples

Description

Download ENCODE samples

Usage

downloadENCODEsamples(metadata)

Arguments

metadata

Character: ENCODE metadata

Value

List of loaded ENCODE samples

Examples

if (interactive()) {
  # Download ENCODE metadata for a specific cell line and gene
  cellLine <- "HepG2"
  gene <- "EIF4G1"
  ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)

  # Download samples based on filtered ENCODE metadata
  ENCODEsamples <- downloadENCODEsamples(ENCODEmetadata)
}

[Package cTRAP version 1.2.0 Index]