topTable {bacon} | R Documentation |
Extract top features after meta analysis
topTable(object, number = 10, adjust.method = "bonf", sort.by = c("pval", "eff.size")) ## S4 method for signature 'Bacon' topTable(object, number = 10, adjust.method = "bonf", sort.by = c("pval", "eff.size"))
object |
'bacon'-object |
number |
return specified number of top features, n=-1 return all features |
adjust.method |
P-value multiple testing adjustment method default bonferroni |
sort.by |
order results by pval or eff.size |
table with top features
es <- replicate(6, rnormmix(2000, c(0.9, 0, 1, 0, 4, 1))) se <- replicate(6, 0.8*sqrt(4/rchisq(2000,df=4))) bc <- bacon(NULL, es, se) mbc <- meta(bc) topTable(mbc)