diversities {animalcules}R Documentation

Get alpha diversity

Description

Get alpha diversity

Usage

diversities(counts_table, index = "all", zeroes = TRUE)

Arguments

counts_table

A dataframe with organism x sample

index

One of inverse_simpson,gini_simpson,shannon,fisher,coverage

zeroes

A boolean for whether to ignore zero values

Value

A list of alpha diversity

Examples

diversities(matrix(seq_len(12), nrow = 3),index="shannon")


[Package animalcules version 1.0.6 Index]