alpha_div_boxplot {animalcules} | R Documentation |
Alpha diversity boxplot
alpha_div_boxplot(MAE, tax_level, condition, alpha_metric = c("inverse_simpson", "gini_simpson", "shannon", "fisher", "coverage"))
MAE |
A multi-assay experiment object |
tax_level |
The taxon level used for organisms |
condition |
Which condition to group samples |
alpha_metric |
Which alpha diversity metric to use |
A plotly object
data_dir = system.file('extdata/MAE.rds', package = 'animalcules') toy_data <- readRDS(data_dir) p <- alpha_div_boxplot(toy_data, tax_level = 'genus', condition = 'DISEASE', alpha_metric = 'shannon') p