relabu_boxplot {animalcules} | R Documentation |
Plot boxplots comparing different organism prevalence across conditions
relabu_boxplot(MAE, tax_level, condition, organisms = c(), datatype = c("counts", "relative abundance", "logcpm"))
MAE |
A multi-assay experiment object |
tax_level |
The taxon level used for organisms |
condition |
Compare groups by condition e.g. 'SEX' |
organisms |
Include organisms for plotting. |
datatype |
counts, relative abundance,logcpm |
A plotly object
data_dir = system.file('extdata/MAE.rds', package = 'animalcules') toy_data <- readRDS(data_dir) p <- relabu_boxplot(toy_data, tax_level='genus', organisms=c('Escherichia', 'Actinomyces'), condition='SEX', datatype='logcpm') p