amplican_print_reads {amplican} | R Documentation |
Usefull and needed for barcode reports.
amplican_print_reads(forward, reverse)
forward |
(character or vector of characters) Forward reads. |
reverse |
(character or vector of characters) Will be reverse complemented before alignment. |
Vector with alignments ready to be printed.
# load example data unassigned_file <- system.file('extdata', 'results', 'alignments', 'unassigned_reads.csv', package = 'amplican') unassigned <- data.table::setDF(data.table::fread(unassigned_file)) # sort by frequency unassigned <- unassigned[order(unassigned$BarcodeFrequency, decreasing = TRUE), ] # print alignment of most frequent unassigned reads cat(amplican_print_reads(unassigned[1, 'Forward'], unassigned[1, 'Reverse']), sep = "\n")