dispEst {XBSeq} | R Documentation |
The dispersion estimated for each gene are stored as a data.frame after user called estimateSCV
dispEst(object, varname = NA) dispEst(object, varname = NA) <- value
object |
XBSeqDataSet object |
varname |
variable name of dispersion estimates |
value |
The dispersion estimates for each gene |
A data.frame which contains the dispersion estimates for each gene
Yuanhang Liu
H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.
estimateSCV
, dispTable
, XBSeqDataSet
conditions <- factor(c(rep('C1', 3), rep('C2', 3))) data(ExampleData) XB <- XBSeqDataSet(Observed, Background, conditions) XB <- estimateRealCount(XB) XB <- estimateSizeFactors(XB) XB <- estimateSCV(XB, fitType='local') str(dispEst(XB))