TssResult-class {TSSi} | R Documentation |
TssResult
Class TssResult
storing final sequence read data with
identified TSS.
reads
:List with the read data for each segment.
segments
:Data frame with the information of the individual segments.
tss
:List of the identified TSS locations.
annotation
:Annotation data object, as passed through the
annotation
argument.
parameters
:List with the parameters.
All methods for class TssNorm
, as well as:
identify methods:
signature(x="TssNorm")
Identify TSS in the normalized data.
get methods:
signature(x="TssResult")
Get the expectation for non-specific reads, seestart
.
signature(x="TssResult")
Get the identified transcription start sites, seestart
.
signature(x="TssResult")
Subset the object, by name or index.
asRangedData methods:
signature(x="TssResult")
Convert the tss predictions, as obtained by the tss
method,
to an object of class RangedData
.
Maintainer: Julian Gehring <julian.gehring@fdm.uni-freiburg.de>
Classes:
TssData
, TssNorm
,
TssResult
Methods:
segmentizeCounts
, normalizeCounts
,
identifyStartSites
, get-methods
,
plot-methods
, asRangedData-methods
Functions:
subtract-functions
Data set:
physcoCounts
Package:
TSSi-package
showClass("TssResult")